git status --short |
Check working tree before audit commands. |
Succeeded |
Initially clean. Later .coverage appeared after coverage run. |
bash -lc "find . -maxdepth 3 -type f \| sort" |
Required broad file inventory. |
Succeeded |
Produced large inventory including caches, results, site, source, tests, docs, paper artifacts. |
bash -lc "for d in src tests docs; do [ -d \"$d\" ] && find \"$d\" -type f; done \| sort" |
Required scoped file inventory attempt. |
Failed |
Shell quoting produced syntax error: unexpected end of file. |
python --version |
Record Python runtime. |
Succeeded |
Python 3.14.2. |
python -m pip show vamos |
Inspect installed vamos distribution. |
Succeeded |
Editable install reports vamos 0.1.0. |
bash -lc 'for d in src tests docs; do [ -d "$d" ] && find "$d" -type f; done \| sort' |
Retry scoped file inventory. |
Succeeded |
Returned no useful output due quoting/context behavior. |
python -m ruff check . |
Required repo-wide Ruff check. |
Failed |
169 issues, mostly outside src/vamos tests; warning that UP038 ignore is obsolete. |
python -m mypy src |
Required full source type check. |
Failed |
8 errors in archive-related files. |
python -m pyright |
Required pyright check if available. |
Failed |
No module named pyright; tool unavailable. |
python -m vamos --help |
Required module CLI/help check. |
Failed |
No vamos.__main__; package cannot be directly executed. |
bash -lc "find src tests docs -type f \| sort" |
Required scoped file inventory. |
Succeeded |
Listed source, tests, docs, and also tracked/untracked cache files under those trees. |
python -m pytest -q |
Required test suite. |
Succeeded |
1151 passed, 5 skipped, 19 warnings in about 4.5 minutes. |
python -m pytest --cov=src --cov-report=term-missing |
Required coverage run. |
Succeeded |
1151 passed, 5 skipped; total coverage 69%. |
Get-Content pyproject.toml |
Inspect packaging metadata and tool configuration. |
Succeeded |
Confirmed project name/version, extras, script entry point, mypy/Ruff config. |
python -c "import importlib.metadata as md; ..." |
Inspect installed console scripts. |
Succeeded |
Found vamos = vamos.experiment.cli.main:main twice in current environment. |
vamos --help |
Check equivalent CLI help command. |
Succeeded |
Console script printed argparse help. |
python -m pip show vamos-optimization |
Inspect installed package metadata. |
Succeeded |
Editable install reports vamos-optimization 1.0.0. |
python -m coverage report --sort=Cover |
Sort coverage by lowest-covered modules. |
Succeeded |
Confirmed 0% and low-coverage modules; total 69%. |
rg --files -g '*.py' src tests docs |
Enumerate Python source/test files quickly. |
Succeeded |
Listed Python files under source and tests. |
bash -lc "nl -ba src/vamos/__init__.py \| sed -n '1,220p'" |
Inspect package facade lines. |
Succeeded |
Confirmed public exports and lazy problems. |
bash -lc "nl -ba src/vamos/api.py \| sed -n '1,220p'" |
Inspect user-facing API facade. |
Succeeded |
Confirmed stable entrypoint exports. |
bash -lc "nl -ba src/vamos/algorithms.py \| sed -n '1,220p'" |
Inspect algorithm facade. |
Succeeded |
Confirmed config exports and discovery helpers. |
bash -lc "nl -ba src/vamos/foundation/problem/base.py \| sed -n '1,240p'" |
Inspect custom problem base protocol. |
Succeeded |
Confirmed batched objective/constraint validation. |
bash -lc "nl -ba docs/guide/getting-started.md \| sed -n '1,220p'" |
Inspect onboarding docs. |
Succeeded |
Confirmed install, CLI, optimize, make_problem guidance. |
bash -lc "nl -ba src/vamos/experiment/unified.py \| sed -n '1,430p'" |
Inspect optimize API and resolved metadata. |
Succeeded |
Confirmed auto defaults and result metadata. |
bash -lc "nl -ba src/vamos/engine/algorithm/config/base.py \| sed -n '1,340p'" |
Inspect config builder infrastructure. |
Succeeded |
Confirmed shared builder mixins and validation. |
bash -lc "nl -ba src/vamos/engine/algorithm/config/moead.py \| sed -n '1,220p'" |
Inspect active-file MOEA/D config. |
Succeeded |
Confirmed defaults and builder fields. |
bash -lc "nl -ba src/vamos/engine/algorithm/registry.py \| sed -n '1,260p'" |
Inspect algorithm registry and plugin loading. |
Succeeded |
Confirmed built-ins and vamos.algorithms plugin group. |
bash -lc "nl -ba src/vamos/experiment/cli/main.py \| sed -n '1,260p'" |
Inspect CLI dispatch. |
Succeeded |
Confirmed subcommands and standard CLI path. |
bash -lc "nl -ba README.md \| sed -n '1,240p'" |
Inspect README claims and onboarding. |
Succeeded |
Confirmed features, install, quickstart, tuning guidance. |
bash -lc "nl -ba src/vamos/foundation/kernel/numpy_backend.py \| sed -n '1,430p'" |
Inspect core vectorized kernels. |
Succeeded |
Confirmed dense/blocked nondominated sort and tournament sampling. |
bash -lc "nl -ba src/vamos/engine/algorithm/nsgaii/helpers.py \| sed -n '1,280p'" |
Inspect NSGA-II helpers and selection/survival paths. |
Succeeded |
Confirmed selection and crowding helpers. |
bash -lc "nl -ba src/vamos/engine/algorithm/moead/moead.py \| sed -n '1,280p'" |
Inspect MOEA/D loop and batching. |
Succeeded |
Confirmed ask/tell loop and batch parent sampling. |
bash -lc "nl -ba src/vamos/engine/archive/bounded_archive.py \| sed -n '1,360p'" |
Inspect archive pruning paths. |
Succeeded |
Confirmed HV, crowding, KNN, maxmin, ref-dir pruning paths. |
bash -lc "nl -ba tests/architecture/test_layer_boundaries.py \| sed -n '1,220p'" |
Inspect architecture layer guard. |
Succeeded |
Confirmed allowed layer import policy. |
bash -lc "nl -ba tests/architecture/test_mypy_error_budget.py \| sed -n '1,220p'" |
Inspect mypy CI scope test. |
Succeeded |
Confirmed CI scope assertions. |
bash -lc "nl -ba src/vamos/foundation/kernel/numpy_backend.py \| sed -n '425,520p'" |
Inspect NSGA-II survival and HV delegation. |
Succeeded |
Confirmed merge/rank/select survival and HV call. |
bash -lc "nl -ba src/vamos/foundation/eval/backends.py \| sed -n '1,290p'" |
Inspect evaluation backends. |
Succeeded |
Confirmed serial, multiprocessing, Dask, and fallback behavior. |
bash -lc "nl -ba src/vamos/foundation/problem/builder.py \| sed -n '1,340p'" |
Inspect function problem builder. |
Succeeded |
Confirmed scalar row-wise adapter and validation. |
bash -lc "nl -ba src/vamos/foundation/quality_indicators/hypervolume.py \| sed -n '1,330p'" |
Inspect hypervolume implementation and fallback. |
Succeeded |
Confirmed generic contribution loop. |
bash -lc "nl -ba src/vamos/experiment/optimization_result/model.py \| sed -n '1,210p'" |
Inspect result API. |
Succeeded |
Confirmed front, best, top_k, defaults explanation. |
bash -lc "nl -ba docs/topics/engineering_audit.md \| sed -n '1,240p'" |
Inspect historical engineering audit context. |
Succeeded |
Treated as historical context, not proof. |
bash -lc "nl -ba pyproject.toml \| sed -n '1,260p'" |
Inspect full packaging/tool config with line numbers. |
Succeeded |
Confirmed extras, scripts, mypy, pytest, Ruff config. |
bash -lc "nl -ba src/vamos/foundation/version.py \| sed -n '1,80p'" |
Inspect runtime version. |
Succeeded |
Confirmed __version__ = "0.1.0". |
bash -lc "nl -ba .github/workflows/ci.yml \| sed -n '1,260p'" |
Inspect CI gates. |
Succeeded |
Confirmed Ruff, mypy subset, tests, docs, wheel smoke. |
bash -lc "nl -ba tests/architecture/test_ruff_gate.py \| sed -n '1,220p'" |
Inspect Ruff lint gate. |
Succeeded |
Confirmed ruff check src/vamos tests. |
bash -lc "nl -ba tests/architecture/test_ruff_format_gate.py \| sed -n '1,220p'" |
Inspect Ruff format budget gate. |
Succeeded |
Confirmed budget-based format check. |
python -m ruff check src/vamos tests |
Check CI-style Ruff scope. |
Succeeded |
All checks passed. |
python -m ruff format --check src/vamos tests |
Check formatting scope. |
Failed |
56 files would be reformatted. |
python -m mypy --config-file pyproject.toml src/vamos/engine/algorithm/config src/vamos/engine/algorithm/registry.py src/vamos/engine/config/spec.py src/vamos/foundation/eval src/vamos/experiment/cli/common.py src/vamos/experiment/optimization_result src/vamos/experiment/unified.py |
Check CI-style mypy scope. |
Failed |
Same 8 archive-related errors because imports pull archive modules. |
bash -lc "nl -ba src/vamos/engine/algorithm/components/archive.py \| sed -n '1,120p'" |
Inspect mypy archive private access. |
Succeeded |
Confirmed _subset_selection._moocore use. |
bash -lc "nl -ba src/vamos/engine/algorithm/components/subset_selection.py \| sed -n '1,80p'" |
Inspect optional MooCore variable. |
Succeeded |
Confirmed _moocore private optional global. |
bash -lc "nl -ba src/vamos/engine/archive/factory.py \| sed -n '1,210p'" |
Inspect archive type aliases. |
Succeeded |
Confirmed runtime Any alias pattern. |
bash -lc "nl -ba src/vamos/engine/hooks/hv_archive_hooks.py \| sed -n '110,155p'" |
Inspect hook archive annotation. |
Succeeded |
Confirmed ResultArchiveManager | None annotation. |
git status --short |
Check generated artifacts after coverage. |
Succeeded |
.coverage untracked. |
Get-Content tests/architecture/ruff_format_budget.json |
Inspect format debt budget. |
Succeeded |
Budget allows up to 100 files. |
Get-Content tests/architecture/mypy_error_budget.json |
Inspect mypy debt budget. |
Succeeded |
Budget allows up to 72 errors. |
rg -n "version\|__version__\|vamos-optimization\|Development Status\|python-version\|python_version" ... |
Find version/package references. |
Succeeded |
Found pyproject 1.0.0 and runtime/citation 0.1.0 references. |
bash -lc "nl -ba README.md \| sed -n '320,370p'" |
Inspect README tuning/citation area. |
Succeeded |
Confirmed citation version 0.1.0. |
bash -lc "nl -ba tests/architecture/mypy_error_budget.json \| sed -n '1,80p'" |
Capture mypy budget lines. |
Succeeded |
Confirmed max_errors 72. |
bash -lc "nl -ba tests/architecture/ruff_format_budget.json \| sed -n '1,80p'" |
Capture format budget lines. |
Succeeded |
Confirmed max_files_to_reformat 100. |
Get-Content CITATION.cff |
Inspect citation metadata. |
Succeeded |
Confirmed version 0.1.0 and release date. |
rg -n "CITATION\|citation\|version:\|version =" CITATION.cff README.md pyproject.toml src/vamos/foundation/version.py |
Find citation/version references. |
Succeeded |
Confirmed mismatched versions. |
python -c "import vamos; print(vamos.__version__)" |
Check runtime package version. |
Succeeded |
Printed 0.1.0. |
python -c "import importlib.metadata as md; print(md.version('vamos-optimization'))" |
Check distribution version. |
Succeeded |
Printed 1.0.0. |
Test-Path docs/audit |
Check target audit directory. |
Succeeded |
Returned False. |
bash -lc "nl -ba pyproject.toml \| sed -n '1,180p'" |
Re-check packaging refs before writing artifacts. |
Succeeded |
Confirmed line references. |
bash -lc "nl -ba src/vamos/foundation/version.py \| sed -n '1,40p'" |
Re-check runtime version refs. |
Succeeded |
Confirmed line references. |
bash -lc "nl -ba CITATION.cff \| sed -n '1,30p'" |
Re-check citation refs. |
Succeeded |
Confirmed line references. |
bash -lc "nl -ba README.md \| sed -n '337,352p'" |
Re-check README citation refs. |
Succeeded |
Confirmed line references. |
New-Item -ItemType Directory -Force docs/audit \| Out-Null |
Create allowed audit artifact directory. |
Succeeded |
Created docs/audit. |
bash -lc "nl -ba src/vamos/experiment/benchmark/cli.py \| sed -n '1,120p'" |
Inspect benchmark CLI low-coverage module. |
Succeeded |
Confirmed CLI parser/main lines. |
bash -lc "nl -ba src/vamos/experiment/profiler/runner.py \| sed -n '1,170p'" |
Inspect profiler low-coverage module. |
Succeeded |
Confirmed run_profile behavior. |
bash -lc "nl -ba src/vamos/ux/panel/pages/problem_builder.py \| sed -n '1,80p'" |
Inspect Panel problem-builder low-coverage module. |
Succeeded |
Confirmed UI state defaults. |
bash -lc "nl -ba src/vamos_contrib/interop/pymoo.py \| sed -n '1,80p'" |
Inspect pymoo interop low-coverage module. |
Succeeded |
Confirmed adapter behavior. |
Python CSV validation via csv.DictReader |
Validate docs/audit/findings.csv schema, row count, severities, efforts, and path/line ranges. |
Succeeded |
CSV OK: 10 findings. |
| Python markdown reference validation |
Validate every markdown reference matching path:Lx-Ly exists and line ranges are in bounds. |
Succeeded |
Line refs OK: 36 refs. |
git status --short |
Confirm final modified/untracked files. |
Succeeded |
Only .coverage and docs/audit/ were shown. |
Python CSV re-validation via csv.DictReader |
Re-check CSV after appending validation commands to this log. |
Succeeded |
CSV still OK. |
git status --short |
Final working tree check after artifact/log updates. |
Succeeded |
Only .coverage and docs/audit/ were shown. |